Publications of Tristan Bereau

Journal Article (57)

41.
Journal Article
Menichetti, R.; Kanekal, K.; Kremer, K.; Bereau, T.: In silico screening of drug-membrane thermodynamics reveals linear relations between bulk partitioning and the potential of mean force. The Journal of Chemical Physics 147 (12), 125101 (2017)
42.
Journal Article
Bereau, T.; Andrienko, D.; Kremer, K.: Research Update: Computational materials discovery in soft matter. APL Materials 4 (5), 053101 (2016)
43.
Journal Article
Bereau, T.; Kremer, K.: Protein-Backbone Thermodynamics across the Membrane Interface. The Journal of Physical Chemistry B 120 (26), pp. 6391 - 6400 (2016)
44.
Journal Article
El Hage, K.; Bereau, T.; Jakobsen, S.; Meuwly, M.: Impact of Quadrupolar Electrostatics on Atoms Adjacent to the Sigma-Hole in Condensed-Phase Simulations. Journal of Chemical Theory and Computation 12 (7), pp. 3008 - 3019 (2016)
45.
Journal Article
Rudzinski, J. F.; Bereau, T.: Concurrent parametrization against static and kinetic information leads to more robust coarse-grained force fields. European Physical Journal - Special Topics 225 (8-9), pp. 1373 - 1389 (2016)
46.
Journal Article
Rudzinski, J. F.; Kremer, K.; Bereau, T.: Communication: Consistent interpretation of molecular simulation kinetics using Markov state models biased with external information. The Journal of Chemical Physics 144 (5), 051102 (2016)
47.
Journal Article
Xiao, Q. R.; Chen, Y. P.; Bereau, T.; Shi, Y. F.: An in-silico walker. Chemical Physics Letters 659, pp. 6 - 9 (2016)
48.
Journal Article
Bereau, T.: Better Together: Lipopeptide Micelle Formation Enhances Antimicrobial Selectivity. Biophysical Journal 109 (4 ), pp. 668 - 669 (2015)
49.
Journal Article
Bereau, T.; Andrienko, D.; von Lilienfeld, O. A.: Transferable Atomic Multipole Machine Learning Models for Small Organic Molecules. Journal of Chemical Theory and Computation 11 (7), pp. 3225 - 3233 (2015)
50.
Journal Article
Bereau, T.; Bennett, W. F. D.; Pfaendtner, J.; Deserno, M.; Karttunen, M.: Folding and insertion thermodynamics of the transmembrane WALP peptide. The Journal of Chemical Physics 143 (24), 243127 (2015)
51.
Journal Article
Bereau, T.; Deserno, M.: Enhanced Sampling of Coarse-Grained Transmembrane-Peptide Structure Formation from Hydrogen-Bond Replica Exchange. Journal of Membrane Biology 248 (3), pp. 395 - 405 (2015)
52.
Journal Article
Bereau, T.; Kremer, K.: Automated Parametrization of the Coarse-Grained Martini Force Field for Small Organic Molecules. Journal of Chemical Theory and Computation 11 (6), pp. 2783 - 2791 (2015)
53.
Journal Article
Cazade, P. A.; Tran, H.; Bereau, T.; Das, A. K.; Kläsi, F.; Hamm, P.; Meuwly, M.: Solvation of fluoro-acetonitrile in water by 2D-IR spectroscopy: A combined experimental-computational study. The Journal of Chemical Physics 142 (21), 212415 (2015)
54.
Journal Article
Jakobsen, S.; Bereau, T.; Meuwly, M.: Multipolar force fields and their effects on solvent dynamics around simple solutes. The Journal of Physical Chemistry B 119 (7), pp. 3034 - 3045 (2015)
55.
Journal Article
Bereau, T.; von Lilienfeld, O. A.: Toward transferable interatomic van der Waals interactions without electrons: The role of multipole electrostatics and many-body dispersion. The Journal of Chemical Physics 141 (3), 034101 (2014)
56.
Journal Article
Bereau, T.; Wang, Z. J.; Deserno, M.: More than the sum of its parts: Coarse-grained peptide-lipid interactions from a simple cross-parametrization. The Journal of Chemical Physics 140 (11), 115101 (2014)
57.
Journal Article
Cazade, P. A.; Bereau, T.; Meuwly, M.: Computational Two-Dimensional Infrared Spectroscopy without Maps: N-Methylacetamide in Water. The Journal of Physical Chemistry B 118 (28), pp. 8135 - 8147 (2014)

Book Chapter (1)

58.
Book Chapter
Bereau, T.: Data-Driven Methods in Multiscale Modeling of Soft Matter. In: Handbook of Materials Modeling, pp. 1 - 12 (Eds. Andreoni, W.; Yip, S.). Springer, Cham (2018)

Meeting Abstract (12)

59.
Meeting Abstract
Girard, M.; Bereau, T.: Imposed and induced asymmetries in membranes. In Biophysical Journal, 121, 215a. Cell Press, Cambridge, Mass. (2022)
60.
Meeting Abstract
Bozkurt Varolgunes, Y.; Bereau, T.; Rudzinski, J. F.: Automated Identification of Collective Variables and Metastable States from Molecular Dynamics Data. In Biophysical Journal, 120, 382-Pos, p. 79A - 79A. 65th Biophysical Society Annual Meeting, Virtual, Online, February 22, 2021 - February 26, 2021. Cell Press, Cambridge, Mass. (2021)
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